With a simple stir together method and just-sweet-enough flavor, these mini Pumpkin Chocolate Chip Muffins are a yummy fall treat to share with the kids. Plus, they store so well!

pumpkin chocolate chip muffins on wire rack

During the fall, I love using pumpkin and the vitamins it contains in lots of ways—outside of just pie! These muffins for kids have a pleasant amount of pumpkin flavor plus nutritious ingredients to make them a balanced breakfast or snack.

And the small size makes them a perfect size for toddlers to pick up and self feed.

I love baking a batch of these muffins ahead of time and having them on hand for easy toddler breakfasts throughout the week. I also love them for my own snacking needs—the hint of chocolate is delicious almost any time of the day!

TIP: To make them ahead and store them for later, simply let the muffins cool and store them in an airtight container in the fridge. Serve them chilled or warm them for 10-15 seconds in the microwave before serving.

(You may also like Easy Pumpkin Muffins, Pumpkin Banana Bread, Pumpkin Cupcakes with Cream Cheese Frosting, and Mini Chocolate Chip Muffins.)

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Ingredients You Need

To make these Pumpkin Chocolate Chip Muffins, you’ll need to have the following ingredients on hand and ready to go.

ingredients in pumpkin chocolate chip muffins
  • Rolled oats: These are also called “old-fashioned oats” at the store. Look for them in the cereal aisle.
  • Flour: Whole-wheat flour keeps the muffins full of whole grains.
  • Pumpkin pie spice: This adds that classic pumpkin flavor we crave.
  • Baking powder and baking soda: A combination of these help the muffins rise nicely while baking.
  • Eggs: Large eggs add moisture and help the batter hold together nicely. See the Notes at the end of the recipe for a substitute.
  • Pumpkin puree: You can use canned pumpkin puree or homemade pumpkin puree.
  • Brown sugar: This adds flavor and sweetness.
  • Oil: You can use any neutral oil you prefer including canola, avocado, or coconut. Melted butter also works.
  • Vanilla extract
  • Chocolate chips: I prefer mini chocolate chips in this recipe, but any will work.

TIP: To make these dairy-free, use dairy-free chocolate chips.

Step-by-Step Instructions

Here’s a look at the super simple process involved in making these Pumpkin Chocolate Chip Muffins. Scroll down to the bottom of the post for the full recipe.

how to make pumpkjn chocolate chip muffins
  1. Preheat the oven and coat a mini muffin tin with nonstick spray. Add all ingredients to a medium bowl
  2. Stir together to combine thoroughly, but gently.
  3. Add a heaping 1 tablespoon to each prepared muffin cup and bake until lightly golden brown around the edges and a cake tester inserted into the middle comes out cleanly.
  4. Cool in the pan slightly. Serve warm, at room temp, or chilled.

TIP: These are great on their own, but you could top with some nut butter or cream cheese if you’d like.

Frequently Asked Questions

Can I make these pumpkin chocolate chip muffins full size?

Yes, bake for closer to 16 minutes and use a standard size muffin pan.

What’s the best way to store muffins?

Let cool fully on a wire rack and place into a storage container. Store at room temperature for 3 days or longer in the fridge. If it is humid, you can line the container with paper towel. And here is how to freeze muffins.

Can I make these muffins without oats?

Yes, you can replace the oats with all purpose flour.

healthy pumpkin chocolate chip muffins on orange plate

How to Store

Let pumpkin chocolate chip muffins cool and store in an airtight container at room temperature for 3 days or in the fridge for up to 5. Serve cold or warm briefly in the microwave. You can also store in the freezer for up 3 months. Thaw in the fridge or at room temperature.

Best Tips for Success

  • Gluten-free: Use gluten-free oats and a gluten-free flour blend.
  • Dairy-free: Use dairy-free chocolate chips.
  • Egg-free: Grind the oats in a food processor or blender before you add them to the batter to create more of a flour-like consistency or use purchased oat flour. And omit the eggs and add 1 tablespoon ground flaxseeds and ¼ cup water or milk.
  • You can, of course, use dried cranberries or raisins in place of the chocolate chips if you prefer.
  • Cut muffins into smaller pieces for your child if needed.
  • Pair with a side of fruit and/or milk for a simple snack or breakfast.
  • If you have more pumpkin to use, try my Pumpkin Banana Muffins or Pumpkin Protein Muffins.

I’d love to hear what you and your kids think of the recipe when you make them so please comment below!

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pumpkin-chocolate-chip-mini-muffins

Pumpkin Chocolate Chip Muffins

These whole grain Pumpkin Chocolate Chip Muffins have delicious pumpkin flavor and just enough chocolate chips. They're moist and a great breakfast or snack to share with the kids.
4.98 from 41 votes
Prep Time 10 minutes
Cook Time 15 minutes
Total Time 25 minutes
Cuisine American
Course Breakfast
Calories 110kcal
Servings 12 (Makes 24 mini muffins)

Ingredients

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Instructions

  • Preheat the oven to 350 degrees F and coat a 24 cup mini muffin tin with nonstick spray.
  • Add all ingredients to a medium bowl and stir together to combine thoroughly, but gently.
  • Add a heaping 1 tablespoon to each prepared muffin cup and bake for 15-17 minutes or until lightly golden brown around the edges and a cake tester inserted into the middle comes out cleanly. Cool muffins in the pan for 2 minutes and transfer to a wire rack to cool completely.
  • Serve warm, at room temp, or chilled.

Notes

  • Let muffins cool and store in an airtight container at room temperature for 3 days or in the fridge for up to 5. Serve cold or warm briefly in the microwave. You can also store in the freezer for up 3 months. Thaw in the fridge or at room temperature.
  • Gluten-free: Use gluten-free oats and a gluten-free flour blend.
  • Dairy-free: Use dairy-free chocolate chips.
  • Egg-free: Grind the oats in a food processor or blender before you add them to the batter to create more of a flour-like consistency or use purchased oat flour. And omit the eggs and add 1 tablespoon ground flaxseeds and ¼ cup water or milk.
  • You can, of course, use dried cranberries or raisins in place of the chocolate if you prefer.
  • Cut muffins into smaller pieces for your child if needed.
  • Use canned or homemade pumpkin puree.

Nutrition

Serving: 2muffins, Calories: 110kcal, Carbohydrates: 15g, Protein: 3g, Fat: 5g, Saturated Fat: 1g, Polyunsaturated Fat: 1g, Monounsaturated Fat: 3g, Trans Fat: 1g, Cholesterol: 27mg, Sodium: 71mg, Potassium: 103mg, Fiber: 2g, Sugar: 5g, Vitamin A: 3218IU, Vitamin C: 1mg, Calcium: 39mg, Iron: 1mg
Tried this recipe?Rate in the comments and tag @yummytoddlerfood on IG!

This post was first published September 2019.

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4.98 from 41 votes (11 ratings without comment)

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Comments

  1. 5 stars
    These muffins are delicious!! I have a 13 month old and he devours these haha but so do I! I cut the amount of chocolate in more than half and chopped it up before adding it to the batter and it was the perfect amount. We’ll be making these all the time!

  2. 5 stars
    Just made these this morning before getting the kids ready for school. I love how I can use just one bowl. Recipe comes together very quickly. Muffins have great texture and yummy pumpkin flavor.

  3. 5 stars
    We make these delicious muffins year round! They are moist and tender and have excellent fall spice flavor with just the right amount of sweetness!

  4. 5 stars
    SO good! My almost 2 year old is very picky but he does eat a few varieties of your muffins. Each time i try a new muffin recipe it’s a toss up if he’ll even try it or not. After a few days he finally tried these and seems to live them as much as his favorite zucchini chocolate chip muffins. The best part is I think they’re super yummy too. As someone else said they’re healthier than the average pumpkin muffin, but don’t taste like a boring health muffin. Win win .

  5. 5 stars
    Absolutely delicious and so easy. 2.5 year old helped make them and loved them. The texture is great. Will definitely make again!

  6. 5 stars
    Just made these and they turned out so great! I used gluten-free flour and upped the flour from 1/2 cup to 3/4 cup. I also added some hemp seeds.

  7. 5 stars
    I love that these had whole grains and oats and not too much sugar without tasting like a recipe that’s trying to be healthy. My 15 month old and three year old looooove them and enjoyed making them with me.
    Your website is a gem! Thank you!

  8. 5 stars
    These were so delicious! I ended up using coconut oil and used dried cranberries rather than chocolate chips. They came out so good!

  9. I haven’t tested them as full size muffins but you might need to raise the temperature to 375 to get them to bake through with that amount of batter.

  10. 5 stars
    I love this recipe. Easy and delicious! Perfect to make with a toddler who’s afraid of the blender/loud noises… thank you !

  11. Can these be adapted to keto? I’m diabetic but absolutely love pumpkin loaf, muffins, etc.! I prefer almond flour or coconut flour but can also use oats.

    1. I don’t know that they would work with straight almond or coconut flour but you could look at a keto baking mix which might have a mix that’s better designed to work as a 1:1 sub.

  12. 5 stars
    These are incredibly easy to make and delicious.
    Not having to blend or get the mixer out is AMAZING!
    I am not a baker and when using new ingredients (ie: pumpkin or coconut oil) is involved I shy away from the recipe. So glad I didn’t….:-)
    Will def be in the rotation year round!

    1. You probably could but I wouldn’t add too much since that might make the muffins a little too dense (or reduce the oats a little)

  13. 5 stars
    Can I use fresh pureed pumpkin (homemade from a roasted pumpkin)? I know in some recipes you can’t substitute because the homemade pumpkin puree is different and possibly has more water in it.

    Can’t wait to try it 🙂

    1. You should be able to—if there’s any liquid that you can see when your puree is sitting, I would drain that off first.

  14. 5 stars
    I have made this recipe so many times! My whole family loves them. Its a versatile recipe! I recently started putting all the ingredients into a food processor and adding spinach. Kids don’t even realize! Thanks for a great recipe!

  15. 5 stars
    My first pumpkin recipe of the season and it seems like it turned out OK. Just moved in testing out the oven for the first time also. I like the texture that the oats give the muffins. I was maybe hoping for a bit of a smoother final product but this looks good for the first run through. Thanks for the recipe.

      1. 5 stars
        Thank you Amy. I love that these muffins can be made in one bowl without a mixer. I used carob chips because of an intolerance to chocolate and they turned out just fine. Love your healthy recipes.

    1. I would maybe agree that it maybe needs a pinch of salt but sometimes my recipes are too salty and I tend to use unsalted butter now in recipes that call for butter.

  16. 5 stars
    I just made these and they are delicious! I made 12 big ones instead and my husband had eaten 6 before my toddler had a chance to try one! I guess I will be doubling the batch next time!

  17. 5 stars
    These just came out of the oven and my 21 month old has already eaten 3!! He is muffin obsessed right now so we will be trying many more recipes in the days to come. I love the texture the oatmeal adds and found these to have just the right amount of sweetness!

  18. 5 stars
    Just made these with raisins and they are great! We almost made your other pumpkin muffins but wanted a nut-free snack to send to school. My husband and I love them, 2 year old is still deciding….but her likes change daily!! ?. I’m sure she’ll love them tomorrow.

    1. 5 stars
      Oh and I cooked these for just 14 minutes and they were perfect. Would have been overcooked if I left them any longer. Just a piece of advice in case others have similar ovens!

  19. 5 stars
    These were really yummy – pumpkin-y and not super sweet. We all loved them! I used quick oats in place of the rolled oats. Thanks for all the great muffin recipes!

  20. 5 stars
    Hi Amy, these muffins were quick to make and came out really moist! I love baking with pumpkin for that reason 🙂 I omitted the chocolate chips and decided to make 12 regular-sized muffins instead of mini muffins (still took them out around 17 mins). I also used cinnamon instead of pumpkin pie spice. Thank you for your recipe! Looking forward to sharing them with my 1 year old.

  21. 5 stars
    These are easy to make and delicious! I love the low sugar taste, and my 15 month old loves them too! I am so happy I found your website! I have made a few recipes so far and each my toddler loved!! (The healthy pumpkin muffins and the chicken nuggets with hidden sweet potato.) Both I have made a few times each, she can’t get enough of them!

    I love that most of your recipes are freezable, it is so great having heathy things I made at hand when she needs a meal/snack! Thank you 🙂

  22. 5 stars
    I made these muffins 2 days in a row! My family and little one love them! I am so happy I found this blog! My daughter can be bit of a picky eater and these recipes are easy for us to make together, so she knows what is in her food!
    Thank you!